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[bug] pin bioperl version in Prokka module

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Robert A. Petit III 2022-02-15 21:36:39 -07:00 committed by GitHub
parent 7560689375
commit 4279c84463
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modules/prokka/main.nf
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@ -2,7 +2,7 @@ process PROKKA {
tag "$meta.id" tag "$meta.id"
label 'process_low' label 'process_low'
conda (params.enable_conda ? "bioconda::prokka=1.14.6" : null) conda (params.enable_conda ? "bioconda::prokka=1.14.6 bioconda::perl-bioperl=1.7.2" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/prokka:1.14.6--pl526_0' : 'https://depot.galaxyproject.org/singularity/prokka:1.14.6--pl526_0' :
'quay.io/biocontainers/prokka:1.14.6--pl526_0' }" 'quay.io/biocontainers/prokka:1.14.6--pl526_0' }"