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Update tests/subworkflows/nf-core/bam_qc_picard/main.nf

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Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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Matthias De Smet 2022-04-28 10:05:31 +02:00 committed by GitHub
parent 8fb8199f31
commit 433aaece46
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tests/subworkflows/nf-core/bam_qc_picard/main.nf
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@ -16,6 +16,8 @@ workflow test_bam_qc_picard_targetted {
input = [ [ id:'test', single_end:false ], // meta map input = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true) file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
] ]
bait = file(params.test_data['sarscov2']['genome']['baits_interval_list'], checkIfExists: true)
target = file(params.test_data['sarscov2']['genome']['targets_interval_list'], checkIfExists: true)
BAM_QC_PICARD ( input, [], file(params.test_data['sarscov2']['genome']['baits_interval_list'], checkIfExists: true), file(params.test_data['sarscov2']['genome']['targets_interval_list'], checkIfExists: true) ) BAM_QC_PICARD ( input, [], bait, target )
} }