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Update tests/subworkflows/nf-core/bam_qc_picard/main.nf
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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@ -16,6 +16,8 @@ workflow test_bam_qc_picard_targetted {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
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]
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bait = file(params.test_data['sarscov2']['genome']['baits_interval_list'], checkIfExists: true)
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target = file(params.test_data['sarscov2']['genome']['targets_interval_list'], checkIfExists: true)
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BAM_QC_PICARD ( input, [], file(params.test_data['sarscov2']['genome']['baits_interval_list'], checkIfExists: true), file(params.test_data['sarscov2']['genome']['targets_interval_list'], checkIfExists: true) )
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BAM_QC_PICARD ( input, [], bait, target )
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}
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