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removed include and changed process name due to expected folder name before tokenize

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This commit is contained in:
Carpanzano 2022-05-02 18:38:59 +02:00
parent 32b8f3f612
commit 5136ed29c4
1 changed files with 4 additions and 5 deletions
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9
tests/modules/krona/ktimporttaxonomy/main.nf
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@ -2,9 +2,8 @@
nextflow.enable.dsl = 2
include { KRONA_KTIMPORTTAXONOMY as TAXONOMY_READS } from '../../../../modules/krona/ktimporttaxonomy/main.nf'
include { KRONA_KTIMPORTTAXONOMY as TAXONOMY_REPORT } from '../../../../modules/krona/ktimporttaxonomy/main.nf'
include { KRONA_KRONADB as DOWNLOAD_DB } from '../../../../modules/krona/kronadb/main.nf'
include { KRONA_KTIMPORTTAXONOMY as KRONA_TAXONOMY_READS } from '../../../../modules/krona/ktimporttaxonomy/main.nf'
include { KRONA_KTIMPORTTAXONOMY as KRONA_TAXONOMY_REPORT } from '../../../../modules/krona/ktimporttaxonomy/main.nf'
workflow test_krona_ktimporttaxonomy_reads {
@ -14,7 +13,7 @@ workflow test_krona_ktimporttaxonomy_reads {
]
taxonomy = file("https://raw.githubusercontent.com/lescai/test-datasets/modules/data/genomics/sarscov2/metagenome/krona_taxonomy.tab")
TAXONOMY_READS ( input, taxonomy )
KRONA_TAXONOMY_READS ( input, taxonomy )
}
workflow test_krona_ktimporttaxonomy_report {
@ -25,5 +24,5 @@ workflow test_krona_ktimporttaxonomy_report {
]
taxonomy = file("https://raw.githubusercontent.com/lescai/test-datasets/modules/data/genomics/sarscov2/metagenome/krona_taxonomy.tab")
TAXONOMY_REPORT ( input, taxonomy )
KRONA_TAXONOMY_REPORT ( input, taxonomy )
}