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update stub for svdb/merge (#2066)

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update stub

Co-authored-by: Annick Renevey <47788523+rannick@users.noreply.github.com>
This commit is contained in:
Ramprasad Neethiraj 2022-09-15 14:20:09 +02:00 committed by GitHub
parent 847bebc0ab
commit 513b5fcab9
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2 changed files with 8 additions and 1 deletions
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2
modules/svdb/merge/main.nf
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@ -48,7 +48,7 @@ process SVDB_MERGE {
stub: stub:
def prefix = task.ext.prefix ?: "${meta.id}" def prefix = task.ext.prefix ?: "${meta.id}"
""" """
touch ${prefix}_sv_merge.vcf touch ${prefix}_sv_merge.vcf.gz
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":

7
tests/modules/svdb/merge/test.yml
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@ -12,3 +12,10 @@
- svdb/merge - svdb/merge
files: files:
- path: output/svdb/test_sv_merge.vcf.gz - path: output/svdb/test_sv_merge.vcf.gz
- name: svdb merge test_svdb_merge_noprio stub
command: nextflow run ./tests/modules/svdb/merge -entry test_svdb_merge_noprio -c ./tests/config/nextflow.config -c ./tests/modules/svdb/merge/nextflow.config -stub
tags:
- svdb
- svdb/merge
files:
- path: output/svdb/test_sv_merge.vcf.gz