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Add test directory

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drpatelh 2020-08-06 11:32:38 +01:00
parent b7d0ee043e
commit 530b4c1bd9
2 changed files with 17 additions and 0 deletions
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15
software/SOFTWARE/TOOL/test/main.nf Normal file
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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include '../../../../tests/functions/check_process_outputs.nf' params(params)
include '../main.nf' params(params)
reads = '../../../../test-datasets/tools/bwa/mem/reads/*_R{1,2}_001.fastq.gz'
index = '../../../../test-datasets/tools/bwa/mem/index/H3N2.{amb,ann,bwt,pac,sa}'
prefix = 'H3N2'
workflow {
read_input=Channel.fromFilePairs(reads)
bwa_mem(read_input,file(index),prefix)
}

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software/SOFTWARE/TOOL/test/nextflow.config Normal file
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docker.enabled = true
params.outdir = './results'