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fix(preseq): Update lcextrap file name

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Edmund Miller 2022-02-17 15:34:26 -06:00
parent 9e9ff6a86d
commit 5b833f9b15
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2 changed files with 6 additions and 6 deletions
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8
modules/preseq/lcextrap/main.nf
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@ -12,9 +12,9 @@ process PRESEQ_LCEXTRAP {
tuple val(meta), path(bam) tuple val(meta), path(bam)
output: output:
tuple val(meta), path("*.ccurve.txt"), emit: ccurve tuple val(meta), path("*.lc_extrap.txt"), emit: lc_extrap
tuple val(meta), path("*.log") , emit: log tuple val(meta), path("*.log") , emit: log
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when
@ -28,7 +28,7 @@ process PRESEQ_LCEXTRAP {
lc_extrap \\ lc_extrap \\
$args \\ $args \\
$paired_end \\ $paired_end \\
-output ${prefix}.ccurve.txt \\ -output ${prefix}.lc_extrap.txt \\
$bam $bam
cp .command.err ${prefix}.command.log cp .command.err ${prefix}.command.log

4
tests/modules/preseq/lcextrap/test.yml
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@ -4,7 +4,7 @@
- preseq - preseq
- preseq/lcextrap - preseq/lcextrap
files: files:
- path: output/preseq/test.ccurve.txt - path: output/preseq/test.lc_extrap.txt
md5sum: 1fa5cdd601079329618f61660bee00de md5sum: 1fa5cdd601079329618f61660bee00de
- path: output/preseq/test.command.log - path: output/preseq/test.command.log
@ -14,6 +14,6 @@
- preseq - preseq
- preseq/lcextrap - preseq/lcextrap
files: files:
- path: output/preseq/test.ccurve.txt - path: output/preseq/test.lc_extrap.txt
md5sum: 10e5ea860e87fb6f5dc10f4f20c62040 md5sum: 10e5ea860e87fb6f5dc10f4f20c62040
- path: output/preseq/test.command.log - path: output/preseq/test.command.log