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Update pangolin to 3.1.11 (#721)

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* Update pangolin to 3.1.11.

* Update md5sum for test.pangolin.csv.
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Michael L Heuer 2021-09-20 13:59:05 -05:00 committed by GitHub
parent 4f0b02b7b5
commit 60d8bd7c04
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GPG key ID: 4AEE18F83AFDEB23
2 changed files with 4 additions and 4 deletions
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6
modules/pangolin/main.nf
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@ -11,11 +11,11 @@ process PANGOLIN {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? 'bioconda::pangolin=3.1.7' : null) conda (params.enable_conda ? 'bioconda::pangolin=3.1.11' : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container 'https://depot.galaxyproject.org/singularity/pangolin:3.1.7--pyhdfd78af_0' container 'https://depot.galaxyproject.org/singularity/pangolin:3.1.11--pyhdfd78af_1'
} else { } else {
container 'quay.io/biocontainers/pangolin:3.1.7--pyhdfd78af_0' container 'quay.io/biocontainers/pangolin:3.1.11--pyhdfd78af_1'
} }
input: input:

2
tests/modules/pangolin/test.yml
View file

@ -4,4 +4,4 @@
- pangolin - pangolin
files: files:
- path: ./output/pangolin/test.pangolin.csv - path: ./output/pangolin/test.pangolin.csv
md5sum: 8daea6ca9fee7b747080d4d2b28a83d7 md5sum: 4eaff46b5b11cd59fb44d4e8e7c4945e