now with conda-based images

modules/maxquant/lfq/Dockerfile

@@ -1,16 +0,0 @@
-FROM nfcore/base
-LABEL authors="Niclas Kildegaard Nielsen and Veit Schwämmle" \
-      description="Docker image containing all requirements for maxquant pipeline"
-
-COPY environment.yml /
-# Create the environment:
-RUN conda env create -f /environment.yml && conda clean -a
-# Make RUN commands use the new environment:
-
-# Activates the env for the program to run in
-RUN echo "source activate nf-core-maxquant" > ~/.bashrc
-ENV PATH /opt/conda/envs/nf-core-maxquant/bin:$PATH
-
-# Changes the Work dir to the SDRF file area
-WORKDIR /
-# ENTRYPOINT ["/bin/bash"]

modules/maxquant/lfq/environment.yml

@@ -1,11 +0,0 @@
-name: nf-core-maxquant
-channels:
-  - conda-forge
-  - bioconda
-  - defaults
-dependencies:
-  - r-hexbin
-  - mono=5.14.0.177
-  - maxquant=1.6.10.43
-  - sdrf-pipelines=0.0.12
-  - bioconductor-normalyzerde=1.8