ci: Setup multiple profiles for testing

Added conda and singularity

.github/workflows/pytest-workflow.yml

@@ -24,6 +24,7 @@ jobs:
       matrix:
         nxf_version: ['20.11.0-edge']
         tags: ['${{ fromJson(needs.changes.outputs.modules) }}']
+        profile: ['docker', 'singularity', 'conda' ]
     env:
       NXF_ANSI_LOG: false
     steps:
@@ -59,9 +60,22 @@ jobs:
       - name: Install dependencies
         run: python -m pip install --upgrade pip pytest-workflow
 
+      - name: Set up Singularity
+        if: matrix.profile == 'singularity'
+        uses: eWaterCycle/setup-singularity@v5
+        with:
+          singularity-version: 3.6.4
+
+      - name: Setup conda
+        if: matrix.profile == 'conda'
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+
       # Test the module
       - name: Run pytest-workflow
-        run: PROFILE=docker pytest --tag ${{ matrix.tags }} --symlink --wt 2
+        run: PROFILE=${{ matrix.profile }} pytest --tag ${{ matrix.tags }} --symlink --wt 2
 
       - name: Upload logs on failure
         if: ${{ failure() }}