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Changed tbi as optional output in GATK4 HaplotypeCaller (#1576)

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* Changed tbi as optional output. HC cannot index a VCF from large chromosomes.

* Apply suggestions from code review

* Update modules/gatk4/haplotypecaller/main.nf

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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Praveen Raj S 2022-04-28 13:41:20 +02:00 committed by GitHub
parent 1b5d3f5ac2
commit 68f1c27169
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modules/gatk4/haplotypecaller/main.nf
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@ -17,7 +17,7 @@ process GATK4_HAPLOTYPECALLER {
output: output:
tuple val(meta), path("*.vcf.gz"), emit: vcf tuple val(meta), path("*.vcf.gz"), emit: vcf
tuple val(meta), path("*.tbi") , emit: tbi tuple val(meta), path("*.tbi") , optional:true, emit: tbi
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when: