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drpatelh 2020-10-12 16:20:35 +01:00
parent 64377d4035
commit 6bb3d5caea
1 changed files with 3 additions and 3 deletions
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6
software/rsem/preparereference/main.nf
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@ -8,10 +8,10 @@ process RSEM_PREPAREREFERENCE {
mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:'') }
container "quay.io/biocontainers/rsem:1.3.3--pl526ha52163a_0"
//container "https://depot.galaxyproject.org/singularity/rsem:1.3.3--pl526ha52163a_0"
container "quay.io/biocontainers/mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b:606b713ec440e799d53a2b51a6e79dbfd28ecf3e-0"
//container "https://depot.galaxyproject.org/singularity/mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b:606b713ec440e799d53a2b51a6e79dbfd28ecf3e-0"
conda (params.conda ? "bioconda::rsem=1.3.3" : null)
conda (params.conda ? "bioconda::rsem=1.3.3 bioconda::star=2.7.6a" : null)
input:
path fasta