mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 11:08:17 +00:00
chore: Remove test directory from dummy tool
This commit is contained in:
parent
86219a586b
commit
6eeb930bdb
4 changed files with 0 additions and 56 deletions
|
@ -1,36 +0,0 @@
|
||||||
#!/usr/bin/env nextflow
|
|
||||||
|
|
||||||
nextflow.enable.dsl = 2
|
|
||||||
|
|
||||||
include { FASTQC as FASTQC_SE } from '../main.nf' addParams( options: [ publish_dir:'test_single_end' ] )
|
|
||||||
include { FASTQC as FASTQC_PE } from '../main.nf' addParams( options: [ publish_dir:'test_paired_end' ] )
|
|
||||||
|
|
||||||
/*
|
|
||||||
* Test with single-end data
|
|
||||||
*/
|
|
||||||
workflow test_single_end {
|
|
||||||
|
|
||||||
def input = []
|
|
||||||
input = [ [ id:'test', single_end:true ], // meta map
|
|
||||||
[ file("${baseDir}/input/test_single_end.fastq.gz", checkIfExists: true) ] ]
|
|
||||||
|
|
||||||
FASTQC_SE ( input )
|
|
||||||
}
|
|
||||||
|
|
||||||
/*
|
|
||||||
* Test with paired-end data
|
|
||||||
*/
|
|
||||||
workflow test_paired_end {
|
|
||||||
|
|
||||||
def input = []
|
|
||||||
input = [ [ id:'test', single_end:false ], // meta map
|
|
||||||
[ file("${baseDir}/input/test_R1.fastq.gz", checkIfExists: true),
|
|
||||||
file("${baseDir}/input/test_R2.fastq.gz", checkIfExists: true) ] ]
|
|
||||||
|
|
||||||
FASTQC_PE ( input )
|
|
||||||
}
|
|
||||||
|
|
||||||
workflow {
|
|
||||||
test_single_end()
|
|
||||||
test_paired_end()
|
|
||||||
}
|
|
|
@ -1,20 +0,0 @@
|
||||||
|
|
||||||
params {
|
|
||||||
outdir = "output/"
|
|
||||||
publish_dir_mode = "copy"
|
|
||||||
enable_conda = false
|
|
||||||
}
|
|
||||||
|
|
||||||
profiles {
|
|
||||||
conda {
|
|
||||||
params.enable_conda = true
|
|
||||||
}
|
|
||||||
docker {
|
|
||||||
docker.enabled = true
|
|
||||||
docker.runOptions = '-u \$(id -u):\$(id -g)'
|
|
||||||
}
|
|
||||||
singularity {
|
|
||||||
singularity.enabled = true
|
|
||||||
singularity.autoMounts = true
|
|
||||||
}
|
|
||||||
}
|
|
Loading…
Reference in a new issue