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added bowtie index test github workflow

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kevinmenden 2020-12-08 14:13:30 +01:00
parent 6660a597a3
commit 73530e8df7
1 changed files with 36 additions and 0 deletions
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.github/workflows/bowtie_index.yml vendored Normal file
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name: bowtie_index
on:
push:
paths:
- software/bowtie/index/**
- .github/workflows/bowtie_index.yml
- tests/software/bowtie/**
pull_request:
paths:
- software/bowtie/index/**
- .github/workflows/bowtie_index.yml
- tests/software/bowtie/**
jobs:
ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag bowtie_index --symlink --wt 2