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Removing biocontainer in favor of nf-core container

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This commit is contained in:
JoseEspinosa 2020-07-16 10:22:09 +02:00
parent 6d8b616975
commit 759dd85c92
5 changed files with 5 additions and 10 deletions
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3
software/bedtools/complement/main.nf
View file

@ -11,8 +11,7 @@ process BEDTOOLS_COMPLEMENT {
if (params.publish_results == "none") null if (params.publish_results == "none") null
else filename } else filename }
//container "docker.pkg.github.com/nf-core/$MODULE" container "docker.pkg.github.com/nf-core/$MODULE"
container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'
conda "${moduleDir}/environment.yml" conda "${moduleDir}/environment.yml"

3
software/bedtools/genomecov/main.nf
View file

@ -11,8 +11,7 @@ process BEDTOOLS_GENOMECOV {
if (params.publish_results == "none") null if (params.publish_results == "none") null
else filename } else filename }
//container "docker.pkg.github.com/nf-core/$MODULE" container "docker.pkg.github.com/nf-core/$MODULE"
container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'
conda "${moduleDir}/environment.yml" conda "${moduleDir}/environment.yml"

3
software/bedtools/intersect/main.nf
View file

@ -11,8 +11,7 @@ process INTERSECT_BED {
if (params.publish_results == "none") null if (params.publish_results == "none") null
else filename } else filename }
//container "docker.pkg.github.com/nf-core/$MODULE" container "docker.pkg.github.com/nf-core/$MODULE"
container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'
conda "${moduleDir}/environment.yml" conda "${moduleDir}/environment.yml"

3
software/bedtools/merge/main.nf
View file

@ -11,8 +11,7 @@ process BEDTOOLS_MERGE {
if (params.publish_results == "none") null if (params.publish_results == "none") null
else filename } else filename }
//container "docker.pkg.github.com/nf-core/$MODULE" container "docker.pkg.github.com/nf-core/$MODULE"
container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'
conda "${moduleDir}/environment.yml" conda "${moduleDir}/environment.yml"

3
software/bedtools/sort/main.nf
View file

@ -11,8 +11,7 @@ process BEDTOOLS_SORT {
if (params.publish_results == "none") null if (params.publish_results == "none") null
else filename } else filename }
//container "docker.pkg.github.com/nf-core/$MODULE" container "docker.pkg.github.com/nf-core/$MODULE"
container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'
conda "${moduleDir}/environment.yml" conda "${moduleDir}/environment.yml"