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update gatk4 yml for spark (#1538)

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Maxime U. Garcia 2022-04-19 16:51:59 +02:00 committed by GitHub
parent a6cb75174b
commit 7630e278f3
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1 changed files with 12 additions and 0 deletions
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12
tests/config/pytest_modules.yml
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@ -659,6 +659,10 @@ gatk4/applybqsr:
- modules/gatk4/applybqsr/** - modules/gatk4/applybqsr/**
- tests/modules/gatk4/applybqsr/** - tests/modules/gatk4/applybqsr/**
gatk4/applybqsrspark:
- modules/gatk4/applybqsrspark/**
- tests/modules/gatk4/applybqsrspark/**
gatk4/applyvqsr: gatk4/applyvqsr:
- modules/gatk4/applyvqsr/** - modules/gatk4/applyvqsr/**
- tests/modules/gatk4/applyvqsr/** - tests/modules/gatk4/applyvqsr/**
@ -667,6 +671,10 @@ gatk4/baserecalibrator:
- modules/gatk4/baserecalibrator/** - modules/gatk4/baserecalibrator/**
- tests/modules/gatk4/baserecalibrator/** - tests/modules/gatk4/baserecalibrator/**
gatk4/baserecalibratorspark:
- modules/gatk4/baserecalibratorspark/**
- tests/modules/gatk4/baserecalibratorspark/**
gatk4/bedtointervallist: gatk4/bedtointervallist:
- modules/gatk4/bedtointervallist/** - modules/gatk4/bedtointervallist/**
- tests/modules/gatk4/bedtointervallist/** - tests/modules/gatk4/bedtointervallist/**
@ -743,6 +751,10 @@ gatk4/markduplicates:
- modules/gatk4/markduplicates/** - modules/gatk4/markduplicates/**
- tests/modules/gatk4/markduplicates/** - tests/modules/gatk4/markduplicates/**
gatk4/markduplicatesspark:
- modules/gatk4/markduplicatesspark/**
- tests/modules/gatk4/markduplicatesspark/**
gatk4/mergebamalignment: gatk4/mergebamalignment:
- modules/gatk4/mergebamalignment/** - modules/gatk4/mergebamalignment/**
- tests/modules/gatk4/mergebamalignment/** - tests/modules/gatk4/mergebamalignment/**