Update main.nf

This commit is contained in:
Subazini TK 2022-05-13 14:56:36 +02:00 committed by Edmund Miller
parent 060d33f2c3
commit 78dc1af1e6

View file

@ -1,20 +1,3 @@
// TODO nf-core: If in doubt look at other nf-core/modules to see how we are doing things! :)
// https://github.com/nf-core/modules/tree/master/modules
// You can also ask for help via your pull request or on the #modules channel on the nf-core Slack workspace:
// https://nf-co.re/join
// TODO nf-core: A module file SHOULD only define input and output files as command-line parameters.
// All other parameters MUST be provided using the "task.ext" directive, see here:
// https://www.nextflow.io/docs/latest/process.html#ext
// where "task.ext" is a string.
// Any parameters that need to be evaluated in the context of a particular sample
// e.g. single-end/paired-end data MUST also be defined and evaluated appropriately.
// TODO nf-core: Software that can be piped together SHOULD be added to separate module files
// unless there is a run-time, storage advantage in implementing in this way
// e.g. it's ok to have a single module for bwa to output BAM instead of SAM:
// bwa mem | samtools view -B -T ref.fasta
// TODO nf-core: Optional inputs are not currently supported by Nextflow. However, using an empty
// list (`[]`) instealdd of a file can be used to work around this issue.
process HMTNOTE {
tag "$meta.id"
label 'process_low'
@ -76,7 +59,7 @@ process HMTNOTE {
touch ${prefix}_annotated.vcf
cat <<-END_VERSIONS > versions.yml
"${task.process}":
hmtnote: \$(echo \$(hmtnote --version 2>&1) | sed 's/^.*hmtnote //; s/Using.*\$//' ))
hmtnote: \$(echo \$(hmtnote --version 2>&1) | sed 's/^.*hmtnote, version //; s/Using.*\$//' ))
END_VERSIONS
"""
}