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Finished module with md5sums

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sruthipsuresh 2021-01-12 09:29:31 -06:00
parent 0a04c96357
commit 7c88cf4f67
3 changed files with 3080 additions and 11 deletions
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3050
tests/data/gff/a.gtf Normal file
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4
tests/software/stringtie/main.nf
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@ -2,8 +2,8 @@
nextflow.enable.dsl = 2
include { STRINGTIE as STRINGTIE_F } from '../../../software/stringtie/main.nf' addParams( options: [ publish_dir:'test_forward' ] )
include { STRINGTIE as STRINGTIE_R } from '../../../software/stringtie/main.nf' addParams( options: [ publish_dir:'test_reverse' ] )
include { STRINGTIE as STRINGTIE_F } from '../../../software/stringtie/main.nf' addParams( options: [ publish_dir:'test_stringtie_forward' ] )
include { STRINGTIE as STRINGTIE_R } from '../../../software/stringtie/main.nf' addParams( options: [ publish_dir:'test_stringtie_reverse' ] )
/*
* Test with forward strandedness

37
tests/software/stringtie/test.yml
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@ -3,22 +3,41 @@
tags:
- stringtie
files:
- path: output/test_forward/test.ballgown
- path: output/test_forward/test.gene_abundance.txt
- path: output/test_forward/test.transcripts.gtf
- path: output/test_stringtie_forward/test.gene_abundance.txt
md5sum: cea2e346f4e8137da13265b9b0a4c573
- path: output/test_stringtie_forward/test.transcripts.gtf
md5sum: f1b5baa8d94f86e499556a4ec419a75a
- path: output/test_forward/test.coverage.gtf
- path: output/test_stringtie_forward/test.coverage.gtf
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: output/test_stringtie_forward/test.ballgown/e_data.ctab
md5sum: 48d5ddf52a3d203d9f85aded9600edb9
- path: output/test_stringtie_forward/test.ballgown/e2t.ctab
md5sum: f828838a28ae74dbc21cd5fc75b6d068
- path: output/test_stringtie_forward/test.ballgown/i_data.ctab
md5sum: 4651c095a12836aa3f7bc4d97ae7b877
- path: output/test_stringtie_forward/test.ballgown/i2t.ctab
md5sum: 6d598e0e28ef911d50783cd382e80ae6
- path: output/test_stringtie_forward/test.ballgown/t_data.ctab
md5sum: 0106f70121a8b520d98b8739aed92915
- name: Run stringtie reverse strand test workflow
command: nextflow run ./tests/software/stringtie/ -profile docker -entry test_stringtie_reverse -c tests/config/nextflow.config
tags:
- stringtie
files:
- path: output/test_reverse/test.ballgown
- path: output/test_reverse/test.gene_abundance.txt
- path: output/test_reverse/test.transcripts.gtf
- path: output/test_stringtie_reverse/test.gene_abundance.txt
md5sum: cea2e346f4e8137da13265b9b0a4c573
- path: output/test_stringtie_reverse/test.transcripts.gtf
md5sum: cb0367e5f98f19fcc2043d248deb513c
- path: output/test_reverse/test.coverage.gtf
- path: output/test_stringtie_reverse/test.coverage.gtf
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: output/test_stringtie_reverse/test.ballgown/e_data.ctab
md5sum: 48d5ddf52a3d203d9f85aded9600edb9
- path: output/test_stringtie_reverse/test.ballgown/e2t.ctab
md5sum: f828838a28ae74dbc21cd5fc75b6d068
- path: output/test_stringtie_reverse/test.ballgown/i_data.ctab
md5sum: 4651c095a12836aa3f7bc4d97ae7b877
- path: output/test_stringtie_reverse/test.ballgown/i2t.ctab
md5sum: 6d598e0e28ef911d50783cd382e80ae6
- path: output/test_stringtie_reverse/test.ballgown/t_data.ctab
md5sum: 0106f70121a8b520d98b8739aed92915