small fix and typo

modules/gatk4/reblockgvcf/main.nf

@@ -16,8 +16,8 @@ process GATK4_REBLOCKGVCF {
     path dbsnp_tbi
 
     output:
-    tuple val(meta), path("*.reblock.g.vcf.gz"), path("*.tbi")  , emit: bam
-    path "versions.yml"                                         , emit: versions
+    tuple val(meta), path("*.rb.g.vcf.gz"), path("*.tbi")  , emit: bam
+    path "versions.yml"                                    , emit: versions
 
     when:
     task.ext.when == null || task.ext.when
@@ -37,7 +37,7 @@ process GATK4_REBLOCKGVCF {
     """
     gatk --java-options "-Xmx${avail_mem}g" ReblockGVCF \\
         --variant $gvcf \\
-        --output ${prefix}.reblock.g.vcf.gz \\
+        --output ${prefix}.rb.g.vcf.gz \\
         --reference $fasta \\
         $dbsnp_command \\
         $interval_command \\

modules/gatk4/reblockgvcf/meta.yml

@@ -64,11 +64,11 @@ output:
   - gvcf:
       type: file
       description: Filtered GVCF
-      pattern: "*reblock.g.vcf.gz"
+      pattern: "*rb.g.vcf.gz"
   - tbi:
       type: file
       description: Index of the filtered GVCF
-      pattern: "*reblock.g.vcf.gz.tbi"
+      pattern: "*rb.g.vcf.gz.tbi"
 
 authors:
   - "@nvnieuwk"

tests/modules/gatk4/reblockgvcf/test.yml

@@ -6,7 +6,6 @@
   files:
     - path: output/gatk4/test.reblock.g.vcf.gz
     - path: output/gatk4/test.reblock.g.vcf.gz.tbi
-      md5sum: e1aab7d826a151828fd0671ec5aed2e0
 
 - name: gatk4 reblockgvcf test_gatk4_reblockgvcf_intervals
   command: nextflow run ./tests/modules/gatk4/reblockgvcf -entry test_gatk4_reblockgvcf_intervals -c ./tests/config/nextflow.config  -c ./tests/modules/gatk4/reblockgvcf/nextflow.config
@@ -16,7 +15,6 @@
   files:
     - path: output/gatk4/test.reblock.g.vcf.gz
     - path: output/gatk4/test.reblock.g.vcf.gz.tbi
-      md5sum: e7ca7e9fe76ce12198fd54ec9a64fad4
 
 - name: gatk4 reblockgvcf test_gatk4_reblockgvcf_dbsnp
   command: nextflow run ./tests/modules/gatk4/reblockgvcf -entry test_gatk4_reblockgvcf_dbsnp -c ./tests/config/nextflow.config  -c ./tests/modules/gatk4/reblockgvcf/nextflow.config
@@ -26,4 +24,3 @@
   files:
     - path: output/gatk4/test.reblock.g.vcf.gz
     - path: output/gatk4/test.reblock.g.vcf.gz.tbi
-      md5sum: 017edea27a253eb51cc4505d00dcb295