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Update test assertions

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Thomas A. Christensen II 2022-07-18 10:15:08 -05:00
parent 3f0523ef88
commit 82f85ed4bb
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 39 additions and 12 deletions
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tests/modules/emboss/seqret/test.yml
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@ -1,14 +1,41 @@
## TODO nf-core: Please run the following command to build this file: - name: emboss seqret test_emboss_seqret_gb2embl
# nf-core modules create-test-yml emboss/seqret command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2embl -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
- name: "emboss seqret"
command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
tags: tags:
- "emboss" - emboss
# - emboss/seqret
- "emboss/seqret"
#
files: files:
- path: "output/emboss/test.bam" - path: output/emboss/test.embl
md5sum: e667c7caad0bc4b7ac383fd023c654fc md5sum: 4810933b1b2174f7067d9afa1da8b01b
- path: output/emboss/versions.yml contains: ["ID NZ_CP069563;"] # Human-readable test for correct format and sequence
md5sum: a01fe51bc4c6a3a6226fbf77b2c7cf3b
- name: emboss seqret test_emboss_seqret_gb2gff
command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2gff -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
tags:
- emboss
- emboss/seqret
files:
- path: output/emboss/test.gff
md5sum: 65720c327927edbabc63f9e76afbeb31
contains:
- "##gff-version 3" # Human-readable test for correct format
- ">NZ_CP069563" # Human-readable test for correct sequence
- name: emboss seqret test_emboss_seqret_gb2pir
command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2pir -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
tags:
- emboss
- emboss/seqret
files:
- path: output/emboss/test.pir
md5sum: 49f4a28533e970aa2438d8adf55a26bb
contains: [">D1;NZ_CP069563"] # Human-readable test for correct format and sequence
- name: emboss seqret test_emboss_seqret_gb2fasta
command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2fasta -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
tags:
- emboss
- emboss/seqret
files:
- path: output/emboss/test.fasta
md5sum: 0694275f05780aeb0b54d46687603f44
contains: [">NZ_CP069563"] # Human-readable test for correct format and sequence