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Update agrvate to latest version (#728)

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The new version of agrvate fixes an issue where sample names with a `.` (dot) in there names caused the name to be truncated

https://github.com/VishnuRaghuram94/AgrVATE/releases/tag/v1.0.1

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Robert A. Petit III 2021-09-21 13:28:53 -06:00 committed by GitHub
parent 0d53a34eed
commit 8e9d6cd5e4
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1 changed files with 3 additions and 3 deletions
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modules/agrvate/main.nf
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@ -11,11 +11,11 @@ process AGRVATE {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::agrvate=1.0" : null) conda (params.enable_conda ? "bioconda::agrvate=1.0.1" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/agrvate:1.0--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/agrvate:1.0.1--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/agrvate:1.0--hdfd78af_0" container "quay.io/biocontainers/agrvate:1.0.1--hdfd78af_0"
} }
input: input: