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Corrected test-datasets input

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Thiseas Christos Lamnidis 2022-05-23 17:08:40 +02:00
parent 070dee0f5b
commit 9011fc7212
2 changed files with 4 additions and 4 deletions
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2
tests/modules/sexdeterrmine/main.nf
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@ -9,7 +9,7 @@ workflow test_sexdeterrmine {
input = [ input = [
[ id:'test', single_end:false ], // meta map [ id:'test', single_end:false ], // meta map
file(params.test_data['homo_sapiens']['illumina']['test3.single_end.markduplicates.sorted.bam'], checkIfExists: true) ] file(params.test_data['homo_sapiens']['illumina']['test3_single_end_markduplicates_sorted_bam'], checkIfExists: true) ]
SAMTOOLS_DEPTH ( input ) SAMTOOLS_DEPTH ( input )
SEXDETERRMINE ( SAMTOOLS_DEPTH.out.tsv, [] ) SEXDETERRMINE ( SAMTOOLS_DEPTH.out.tsv, [] )

6
tests/modules/sexdeterrmine/test.yml
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@ -4,12 +4,12 @@
- sexdeterrmine - sexdeterrmine
files: files:
- path: output/samtools/test.tsv - path: output/samtools/test.tsv
md5sum: c894abd0c78ea7760e0b54bbafb93722 md5sum: fa2992ca1ea93a6e1b3e838476191935
- path: output/samtools/versions.yml - path: output/samtools/versions.yml
md5sum: dbd04b700335c8ad236bd667254c8dd8 md5sum: dbd04b700335c8ad236bd667254c8dd8
- path: output/sexdeterrmine/sexdeterrmine.json - path: output/sexdeterrmine/sexdeterrmine.json
md5sum: 16d9e7891d4c92bc1d66db2e70e9d86f md5sum: bafb2419bb8630eda29a251c20e97166
- path: output/sexdeterrmine/test_sexdet.tsv - path: output/sexdeterrmine/test_sexdet.tsv
md5sum: 7ffc35e478de66939819a9ca4a5df2d7 md5sum: 1cf8a2b97b38353eb97a96ab872dcca9
- path: output/sexdeterrmine/versions.yml - path: output/sexdeterrmine/versions.yml
md5sum: 077361101e8e7997aec3da8a01e59eee md5sum: 077361101e8e7997aec3da8a01e59eee