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fixed bug; updated meta.yml
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parent
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commit
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3 changed files with 16 additions and 14 deletions
2
.github/workflows/quast.yml
vendored
2
.github/workflows/quast.yml
vendored
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@ -37,4 +37,4 @@ jobs:
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run: python -m pip install --upgrade pip pytest-workflow
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run: python -m pip install --upgrade pip pytest-workflow
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# Test the module
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# Test the module
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- run: pytest --tag quest --symlink --wt 2
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- run: pytest --tag quast --symlink --wt 2
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@ -5,9 +5,9 @@ keywords:
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- assembly
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- assembly
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- quality
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- quality
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tools:
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tools:
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- star:
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- quast:
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description: |
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description: |
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QUAST calculate quality metrics for genome assemblies
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QUAST calculates quality metrics for genome assemblies
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homepage: http://bioinf.spbau.ru/quast
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homepage: http://bioinf.spbau.ru/quast
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doi:
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doi:
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params:
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params:
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@ -34,15 +34,16 @@ params:
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input:
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input:
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- consensus:
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- consensus:
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type: map
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type: file
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description: |
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description: |
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Groovy Map containing sample information
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Fasta file containing the assembly of interest
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output:
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output:
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- report:
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- results:
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type: file
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type: file
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description: The lineage report
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description: The lineage report
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pattern: "{prefix}.lineage_report.csv"
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pattern: "{prefix}.lineage_report.csv"
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- tsv:
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- version:
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- version:
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type: file
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type: file
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@ -1,13 +1,13 @@
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name: quast
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name: quast_reference
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description: Quality Assessment Tool for Genome Assemblies
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description: Quality Assessment Tool for Genome Assemblies
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keywords:
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keywords:
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- quast
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- quast
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- assembly
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- assembly
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- quality
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- quality
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tools:
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tools:
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- star:
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- quast:
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description: |
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description: |
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QUAST calculate quality metrics for genome assemblies
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QUAST calculates quality metrics for genome assemblies
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homepage: http://bioinf.spbau.ru/quast
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homepage: http://bioinf.spbau.ru/quast
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doi:
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doi:
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params:
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params:
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@ -34,9 +34,9 @@ params:
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input:
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input:
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- consensus:
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- consensus:
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type: map
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type: file
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description: |
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description: |
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Groovy Map containing sample information
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Fasta file containing the assembly of interest
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- fasta:
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- fasta:
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type: file
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type: file
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description: |
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description: |
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@ -46,10 +46,11 @@ input:
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description: The genome GFF file
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description: The genome GFF file
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output:
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output:
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- report:
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- quast:
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type: file
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type: directory
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description: The lineage report
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description: Directory containing complete quast report
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pattern: "{prefix}.lineage_report.csv"
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pattern: "{prefix}.lineage_report.csv"
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- report:
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- version:
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- version:
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type: file
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type: file
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