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fixed bug; updated meta.yml

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kevinmenden 2021-02-01 07:44:26 +01:00
parent 34cfc32c29
commit 956bf22a58
3 changed files with 16 additions and 14 deletions
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2
.github/workflows/quast.yml vendored
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@ -37,4 +37,4 @@ jobs:
run: python -m pip install --upgrade pip pytest-workflow run: python -m pip install --upgrade pip pytest-workflow
# Test the module # Test the module
- run: pytest --tag quest --symlink --wt 2 - run: pytest --tag quast --symlink --wt 2

11
software/quast/quast_noref/meta.yml
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@ -5,9 +5,9 @@ keywords:
- assembly - assembly
- quality - quality
tools: tools:
- star: - quast:
description: | description: |
QUAST calculate quality metrics for genome assemblies QUAST calculates quality metrics for genome assemblies
homepage: http://bioinf.spbau.ru/quast homepage: http://bioinf.spbau.ru/quast
doi: doi:
params: params:
@ -34,15 +34,16 @@ params:
input: input:
- consensus: - consensus:
type: map type: file
description: | description: |
Groovy Map containing sample information Fasta file containing the assembly of interest
output: output:
- report: - results:
type: file type: file
description: The lineage report description: The lineage report
pattern: "{prefix}.lineage_report.csv" pattern: "{prefix}.lineage_report.csv"
- tsv:
- version: - version:
type: file type: file

17
software/quast/quast_ref/meta.yml
View file

@ -1,13 +1,13 @@
name: quast name: quast_reference
description: Quality Assessment Tool for Genome Assemblies description: Quality Assessment Tool for Genome Assemblies
keywords: keywords:
- quast - quast
- assembly - assembly
- quality - quality
tools: tools:
- star: - quast:
description: | description: |
QUAST calculate quality metrics for genome assemblies QUAST calculates quality metrics for genome assemblies
homepage: http://bioinf.spbau.ru/quast homepage: http://bioinf.spbau.ru/quast
doi: doi:
params: params:
@ -34,9 +34,9 @@ params:
input: input:
- consensus: - consensus:
type: map type: file
description: | description: |
Groovy Map containing sample information Fasta file containing the assembly of interest
- fasta: - fasta:
type: file type: file
description: | description: |
@ -46,10 +46,11 @@ input:
description: The genome GFF file description: The genome GFF file
output: output:
- report: - quast:
type: file type: directory
description: The lineage report description: Directory containing complete quast report
pattern: "{prefix}.lineage_report.csv" pattern: "{prefix}.lineage_report.csv"
- report:
- version: - version:
type: file type: file