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Update tests/software/ivar/consensus/main.nf

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Harshil Patel 2021-02-12 23:02:25 +00:00 committed by GitHub
parent f8916060f8
commit 96d3b0a18b
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1 changed files with 1 additions and 3 deletions
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tests/software/ivar/consensus/main.nf
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@ -3,9 +3,7 @@
nextflow.enable.dsl = 2
params.save_mpileup = true
include { IVAR_CONSENSUS } from '../../../../software/ivar/consensus/main.nf' addParams([
options: [args2: '-aa -A -d 0 -Q 0']
])
include { IVAR_CONSENSUS } from '../../../../software/ivar/consensus/main.nf' addParams( [ options: [args2: '-aa -A -d 0 -Q 0'] ] )
workflow test_ivar_consensus {
def ref = file("${launchDir}/tests/data/fasta/sarscov2/MN908947.3.fa", checkIfExists: true)