mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 11:08:17 +00:00
Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
parent
b456d8fa0a
commit
971a889e2a
1 changed files with 1 additions and 1 deletions
|
@ -42,7 +42,7 @@ process BOWTIE2_ALIGN {
|
|||
"""
|
||||
INDEX=`find -L ./ -name "*.rev.1.bt2" | sed "s/.rev.1.bt2//"`
|
||||
[ -z "\$INDEX" ] && INDEX=`find -L ./ -name "*.rev.1.bt2l" | sed "s/.rev.1.bt2l//"`
|
||||
[ -z "\$INDEX" ] && echo "BT2 index files not found" 1>&2 && exit 1
|
||||
[ -z "\$INDEX" ] && echo "Bowtie2 index files not found" 1>&2 && exit 1
|
||||
|
||||
bowtie2 \\
|
||||
-x \$INDEX \\
|
||||
|
|
Loading…
Reference in a new issue