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Update main.nf

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nickhsmith 2022-02-24 11:49:46 +01:00 committed by GitHub
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commit 983ff735dc
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modules/manta/somatic/main.nf
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@ -11,8 +11,7 @@ process MANTA_SOMATIC {
tuple val(meta), path(input_normal), path(input_index_normal), path(input_tumor), path(input_index_tumor) tuple val(meta), path(input_normal), path(input_index_normal), path(input_tumor), path(input_index_tumor)
path fasta path fasta
path fai path fai
path target_bed tuple path(target_bed), path(target_bed_tbi)
path target_bed_tbi
output: output:
tuple val(meta), path("*.candidate_small_indels.vcf.gz") , emit: candidate_small_indels_vcf tuple val(meta), path("*.candidate_small_indels.vcf.gz") , emit: candidate_small_indels_vcf