mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2025-01-03 04:52:09 -05:00
Fix error on previous commit
This commit is contained in:
parent
29989035a5
commit
986b72cee9
2 changed files with 0 additions and 76 deletions
|
@ -1,75 +0,0 @@
|
||||||
name: bcftoos_
|
|
||||||
description: foo
|
|
||||||
keywords:
|
|
||||||
- align
|
|
||||||
- fasta
|
|
||||||
- genome
|
|
||||||
- reference
|
|
||||||
tools:
|
|
||||||
- bowtie2:
|
|
||||||
description: |
|
|
||||||
BCFtools is a set of utilities that manipulate variant calls in the
|
|
||||||
Variant Call Format (VCF) and its binary counterpart BCF.
|
|
||||||
homepage: http://samtools.github.io/bcftools/bcftools.html
|
|
||||||
documentation: http://www.htslib.org/doc/bcftools.html
|
|
||||||
doi: 10.1038/nmeth.1923
|
|
||||||
params:
|
|
||||||
- outdir:
|
|
||||||
type: string
|
|
||||||
description: |
|
|
||||||
The pipeline's output directory. By default, the module will
|
|
||||||
output files into `$params.outdir/<SOFTWARE>`
|
|
||||||
- publish_dir_mode:
|
|
||||||
type: string
|
|
||||||
description: |
|
|
||||||
Value for the Nextflow `publishDir` mode parameter.
|
|
||||||
Available: symlink, rellink, link, copy, copyNoFollow, move.
|
|
||||||
- enable_conda:
|
|
||||||
type: boolean
|
|
||||||
description: |
|
|
||||||
Run the module with Conda using the software specified
|
|
||||||
via the `conda` directive
|
|
||||||
- singularity_pull_docker_container:
|
|
||||||
type: boolean
|
|
||||||
description: |
|
|
||||||
Instead of directly downloading Singularity images for use with Singularity,
|
|
||||||
force the workflow to pull and convert Docker containers instead.
|
|
||||||
- save_unaligned:
|
|
||||||
type: boolean
|
|
||||||
description: Save unaligned reads
|
|
||||||
input:
|
|
||||||
- meta:
|
|
||||||
type: map
|
|
||||||
description: |
|
|
||||||
Groovy Map containing sample information
|
|
||||||
e.g. [ id:'test', single_end:false ]
|
|
||||||
- reads:
|
|
||||||
type: file
|
|
||||||
description: |
|
|
||||||
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
|
||||||
respectively.
|
|
||||||
- index:
|
|
||||||
type: file
|
|
||||||
description: Bowtie2 genome index files
|
|
||||||
pattern: "*.ebwt"
|
|
||||||
output:
|
|
||||||
- bam:
|
|
||||||
type: file
|
|
||||||
description: Output BAM file containing read alignments
|
|
||||||
pattern: "*.{bam}"
|
|
||||||
- version:
|
|
||||||
type: file
|
|
||||||
description: File containing software version
|
|
||||||
pattern: "*.{version.txt}"
|
|
||||||
- fastq:
|
|
||||||
type: file
|
|
||||||
description: Unaligned FastQ files
|
|
||||||
pattern: "*.fastq.gz"
|
|
||||||
- log:
|
|
||||||
type: file
|
|
||||||
description: Aligment log
|
|
||||||
pattern: "*.log"
|
|
||||||
authors:
|
|
||||||
- "@kevinmenden"
|
|
||||||
- "@joseespinosa"
|
|
||||||
- "@drpatelh"
|
|
|
@ -70,6 +70,5 @@ output:
|
||||||
description: Aligment log
|
description: Aligment log
|
||||||
pattern: "*.log"
|
pattern: "*.log"
|
||||||
authors:
|
authors:
|
||||||
- "@kevinmenden"
|
|
||||||
- "@joseespinosa"
|
- "@joseespinosa"
|
||||||
- "@drpatelh"
|
- "@drpatelh"
|
||||||
|
|
Loading…
Reference in a new issue