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veitveit 2022-01-20 18:02:30 +01:00
parent 2d48ca13ba
commit 98db2b9950
4 changed files with 13 additions and 9 deletions
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2
modules/maxquant/lfq/main.nf
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@ -6,7 +6,7 @@ process MAXQUANT_LFQ {
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/maxquant:2.0.1.0--py39hdfd78af_2"
} else {
container "wombatp/maxquant-pipeline:v0.13"
container "wombatp/maxquant-pipeline:v0.13"
}
input:

5
tests/modules/maxquant/lfq/nextflow.config Normal file
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@ -0,0 +1,5 @@
process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
}

1
tests/modules/maxquant/lfq/test.yml
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@ -1,7 +1,6 @@
## TODO nf-core: Please run the following command to build this file:
# nf-core modules create-test-yml maxquant/lfq
- name: maxquant lfq
# command: nextflow run ./tests/modules/maxquant/lfq -entry test_maxquant_lfq --paramfile ./tests/modules/maxquant/lfq/mqpar.xml --raw 'https://github.com/wombat-p/MaxQuant-Workflow/raw/dev/Nextflow/data_test/OVEMB150205_{12,14}.raw' --fasta 'https://github.com/wombat-p/MaxQuant-Workflow/raw/dev/Nextflow/data_test/ABRF_iPRG_2012_target.fasta' -c tests/config/nextflow.config
command: nextflow run ./tests/modules/maxquant/lfq -entry test_maxquant_lfq --paramfile 'https://raw.githubusercontent.com/wombat-p/DSL2-data/master/nf-core-modules/test_data/maxquant/mqpar.xml' --fasta 'https://raw.githubusercontent.com/wombat-p/MaxQuant-Workflow/dev/data/yeast_UPS.fasta' -c tests/config/nextflow.config
tags:
- maxquant