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chores: remove fasta file from bwamem2 mem process

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This commit is contained in:
MaxUlysse 2021-02-12 16:00:59 +01:00
parent 0afddf6ca4
commit 9c98194d3c
2 changed files with 2 additions and 5 deletions
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1
software/bwamem2/mem/main.nf
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@ -21,7 +21,6 @@ process BWAMEM2_MEM {
input: input:
tuple val(meta), path(reads) tuple val(meta), path(reads)
path index path index
path fasta
output: output:
tuple val(meta), path("*.bam"), emit: bam tuple val(meta), path("*.bam"), emit: bam

6
tests/software/bwamem2/mem/main.nf
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@ -15,8 +15,7 @@ workflow test_bwamem2_mem_single_end {
BWAMEM2_MEM ( BWAMEM2_MEM (
input, input,
file("${launchDir}/tests/data/index/E_coli/bwamem2/", checkIfExists: true), file("${launchDir}/tests/data/index/E_coli/bwamem2/", checkIfExists: true)
file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
) )
} }
@ -32,7 +31,6 @@ workflow test_bwamem2_mem_paired_end {
BWAMEM2_MEM ( BWAMEM2_MEM (
input, input,
file("${launchDir}/tests/data/index/E_coli/bwamem2/", checkIfExists: true), file("${launchDir}/tests/data/index/E_coli/bwamem2/", checkIfExists: true)
file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
) )
} }