Bump plasmidid version (#460)

* Bump plasmidid version

* Fix tests

software/plasmidid/main.nf

@@ -11,11 +11,11 @@ process PLASMIDID {
         mode: params.publish_dir_mode,
         saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
 
-    conda (params.enable_conda ? 'bioconda::plasmidid=1.6.4' : null)
+    conda (params.enable_conda ? 'bioconda::plasmidid=1.6.5' : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container 'https://depot.galaxyproject.org/singularity/plasmidid:1.6.4--hdfd78af_3'
+        container 'https://depot.galaxyproject.org/singularity/plasmidid:1.6.5--hdfd78af_0'
     } else {
-        container 'quay.io/biocontainers/plasmidid:1.6.4--hdfd78af_3'
+        container 'quay.io/biocontainers/plasmidid:1.6.5--hdfd78af_0'
     }
 
     input:

tests/software/plasmidid/test.yml

@@ -12,7 +12,7 @@
     - path: output/plasmidid/test/data/test.fna
       md5sum: 503a5e1d4654bb2df19420e211070db3
     - path: output/plasmidid/test/data/test.gbk
-      md5sum: b52331b77a1a8cc16d88807dba97ba6a
+      md5sum: c851bba9da6ec72cce591617067df50b
     - path: output/plasmidid/test/data/test.gff
       md5sum: 3ed8912ee9b0712ca491fa78ff5f4da1
     - path: output/plasmidid/test/data/test.karyotype_individual.txt
@@ -28,7 +28,7 @@
     - path: output/plasmidid/test/database/test.fna
       md5sum: 6b843fe652b4369addb382f61952c3dd
     - path: output/plasmidid/test/database/test.gbk
-      md5sum: a059ee355b0b72c5a116bd2a604fddda
+      md5sum: 1f7972ecbb868823727157d2c482700d
     - path: output/plasmidid/test/database/test.gff
       md5sum: 7e65da147d0a413020b0d92b7b03ffcd
     - path: output/plasmidid/test/fasta_files/MT192765.1_term.fasta