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Bump plasmidid version (#460)

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* Bump plasmidid version

* Fix tests
This commit is contained in:
Harshil Patel 2021-04-26 11:40:38 +01:00 committed by GitHub
parent ae154b8c3f
commit 9ea7f50963
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GPG key ID: 4AEE18F83AFDEB23
2 changed files with 5 additions and 5 deletions
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6
software/plasmidid/main.nf
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@ -11,11 +11,11 @@ process PLASMIDID {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? 'bioconda::plasmidid=1.6.4' : null) conda (params.enable_conda ? 'bioconda::plasmidid=1.6.5' : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container 'https://depot.galaxyproject.org/singularity/plasmidid:1.6.4--hdfd78af_3' container 'https://depot.galaxyproject.org/singularity/plasmidid:1.6.5--hdfd78af_0'
} else { } else {
container 'quay.io/biocontainers/plasmidid:1.6.4--hdfd78af_3' container 'quay.io/biocontainers/plasmidid:1.6.5--hdfd78af_0'
} }
input: input:

4
tests/software/plasmidid/test.yml
View file

@ -12,7 +12,7 @@
- path: output/plasmidid/test/data/test.fna - path: output/plasmidid/test/data/test.fna
md5sum: 503a5e1d4654bb2df19420e211070db3 md5sum: 503a5e1d4654bb2df19420e211070db3
- path: output/plasmidid/test/data/test.gbk - path: output/plasmidid/test/data/test.gbk
md5sum: b52331b77a1a8cc16d88807dba97ba6a md5sum: c851bba9da6ec72cce591617067df50b
- path: output/plasmidid/test/data/test.gff - path: output/plasmidid/test/data/test.gff
md5sum: 3ed8912ee9b0712ca491fa78ff5f4da1 md5sum: 3ed8912ee9b0712ca491fa78ff5f4da1
- path: output/plasmidid/test/data/test.karyotype_individual.txt - path: output/plasmidid/test/data/test.karyotype_individual.txt
@ -28,7 +28,7 @@
- path: output/plasmidid/test/database/test.fna - path: output/plasmidid/test/database/test.fna
md5sum: 6b843fe652b4369addb382f61952c3dd md5sum: 6b843fe652b4369addb382f61952c3dd
- path: output/plasmidid/test/database/test.gbk - path: output/plasmidid/test/database/test.gbk
md5sum: a059ee355b0b72c5a116bd2a604fddda md5sum: 1f7972ecbb868823727157d2c482700d
- path: output/plasmidid/test/database/test.gff - path: output/plasmidid/test/database/test.gff
md5sum: 7e65da147d0a413020b0d92b7b03ffcd md5sum: 7e65da147d0a413020b0d92b7b03ffcd
- path: output/plasmidid/test/fasta_files/MT192765.1_term.fasta - path: output/plasmidid/test/fasta_files/MT192765.1_term.fasta