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Add TrimGalore GitHub Actions test

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This commit is contained in:
drpatelh 2020-08-07 12:21:47 +01:00
parent 36f2544c36
commit 9f4192d433
1 changed files with 8 additions and 7 deletions
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15
.github/workflows/deprecated/trim_galore.yml → .github/workflows/trimgalore.yml vendored
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@ -1,18 +1,18 @@
name: Trim Galore! name: trimgalore
on: on:
push: push:
paths: paths:
- software/trim_galore/** - software/trimgalore/**
- .github/workflows/trim_galore.yml - .github/workflows/trimgalore.yml
- tests - tests
pull_request: pull_request:
paths: paths:
- software/trim_galore/** - software/trimgalore/**
- .github/workflows/trim_galore.yml - .github/workflows/trimgalore.yml
- tests - tests
jobs: jobs:
run_ci_test: ci_test:
runs-on: ubuntu-latest runs-on: ubuntu-latest
env: env:
NXF_ANSI_LOG: false NXF_ANSI_LOG: false
@ -22,8 +22,9 @@ jobs:
- name: Install Nextflow - name: Install Nextflow
run: | run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
# Test the module # Test the module
- run: nextflow run ./software/trim_galore/test/ - run: nextflow run ./software/trimgalore/test/ -profile docker