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seacr | updated test script

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This commit is contained in:
Chris Cheshire 2020-12-17 14:23:20 +00:00
parent 1aa7ed187a
commit a57169a5da
1 changed files with 6 additions and 42 deletions
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48
tests/software/seacr/test.yml
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@ -1,44 +1,8 @@
- name: Run samtools call peak test workflow - name: Run seacr call peak test workflow
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_flagstat -c tests/config/nextflow.config command: nextflow run ./tests/software/seacr/ -profile docker -entry test_seacr_callpeak -c tests/config/nextflow.config
tags: tags:
- samtools - seacr
- samtools_flagstat - seacr_callpeak
files: files:
- path: output/samtools/test.paired_end.sorted.bam.flagstat - path: output/seacr/test_1.stringent.bed
md5sum: 80590621c74f5ee43ada20d010a3837f md5sum: 3ac70475669eb6a7b8ca89e19a08a28e
- name: Run samtools idxstats test workflow
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_idxstats -c tests/config/nextflow.config
tags:
- samtools
- samtools_idxstats
files:
- path: output/samtools/test.paired_end.sorted.bam.idxstats
md5sum: 3bee8b7d55e412da2b3816c5a18d60d5
- name: Run samtools index test workflow
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_index -c tests/config/nextflow.config
tags:
- samtools
- samtools_index
files:
- path: output/samtools/test.paired_end.sorted.bam.bai
md5sum: 67338c2995eae82c849830ca55aa7bd1
- name: Run samtools sort test workflow
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_sort -c tests/config/nextflow.config
tags:
- samtools
- samtools_sort
files:
- path: output/samtools/test.bam
md5sum: a41bfadacd2eeef1d31e05c135cc4f4e
- name: Run samtools stats test workflow
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_stats -c tests/config/nextflow.config
tags:
- samtools
- samtools_stats
files:
- path: output/samtools/test.paired_end.sorted.bam.stats
md5sum: 06c183864d6e47ab89b0650cae831a93