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fix empty index input

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This commit is contained in:
Rike 2022-05-12 17:01:03 +02:00
parent b3bd55da76
commit a694267b4b
1 changed files with 3 additions and 1 deletions
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4
tests/modules/gatk4/genotypegvcfs/main.nf
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@ -65,7 +65,9 @@ workflow test_gatk4_genotypegvcfs_gz_input_intervals {
input = [ [ id:'test' ], // meta map input = [ [ id:'test' ], // meta map
file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz'], checkIfExists: true), file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz'], checkIfExists: true),
file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz_tbi'], checkIfExists: true), file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz_tbi'], checkIfExists: true),
file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true) ] file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true) ,
[]
]
fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true) fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true) fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)