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Update software/gatk/createsequencedictionary/main.nf

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Harshil Patel 2021-02-16 22:08:11 +00:00 committed by GitHub
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commit a6d6c0b973
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software/gatk/createsequencedictionary/main.nf
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@ -37,7 +37,7 @@ process GATK_CREATESEQUENCEDICTIONARY {
gatk --java-options "-Xmx${avail_mem}g" \\
CreateSequenceDictionary \\
--REFERENCE $fasta \\
--URI $fasta
--URI $fasta \\
$options.args
echo \$(gatk CreateSequenceDictionary --version 2>&1) | sed 's/^.*(GATK) v//; s/ HTSJDK.*\$//' > ${software}.version.txt