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nMerge branch 'maxquant' of github.com:veitveit/modules into maxquant

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veitveit 2022-02-09 10:42:17 +01:00
commit aa0e2fa752
3 changed files with 4 additions and 4 deletions
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2
modules/maxquant/lfq/main.nf
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@ -14,7 +14,7 @@ process MAXQUANT_LFQ {
output: output:
tuple val(meta), path("*.txt"), emit: maxquant_txt tuple val(meta), path("*.txt"), emit: maxquant_txt
path "versions.yml" , emit: version path "versions.yml" , emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when

2
modules/maxquant/lfq/meta.yml
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@ -39,7 +39,7 @@ output:
description: | description: |
Groovy Map containing sample information Groovy Map containing sample information
e.g. [ id:'test', single_end:false ] e.g. [ id:'test', single_end:false ]
- version: - versions:
type: file type: file
description: File containing software version description: File containing software version
pattern: "versions.yml" pattern: "versions.yml"

4
tests/config/test_data.config
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@ -388,8 +388,8 @@ params {
ups_file2 = "${test_data_dir}/proteomics/msspectra/OVEMB150205_14.raw" ups_file2 = "${test_data_dir}/proteomics/msspectra/OVEMB150205_14.raw"
} }
'database' { 'database' {
yeast_ups = "${test_data_dir}/proteomics/database/yeast_UPS.fasta" yeast_ups = "${test_data_dir}/proteomics/database/yeast_UPS.fasta"
} }
'parameter' { 'parameter' {
maxquant = "${test_data_dir}/proteomics/parameter/mqpar.xml" maxquant = "${test_data_dir}/proteomics/parameter/mqpar.xml"
} }