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Correct yml file, add fasta to input and correct vcf on output

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This commit is contained in:
JoseEspinosa 2021-02-24 09:15:18 +01:00
parent 138be9f918
commit af7bc743bf
1 changed files with 6 additions and 2 deletions
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8
software/bcftools/mpileup/meta.yml
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@ -42,6 +42,10 @@ input:
type: file type: file
description: Input BAM file description: Input BAM file
pattern: "*.{bam}" pattern: "*.{bam}"
- fasta:
type: file
description: FASTA reference file
pattern: "*.{fasta,fa}"
output: output:
- meta: - meta:
type: map type: map
@ -50,8 +54,8 @@ output:
e.g. [ id:'test', single_end:false ] e.g. [ id:'test', single_end:false ]
- vcf: - vcf:
type: file type: file
description: FASTA reference consensus file description: VCF gzipped output file
pattern: "*.{fasta,fa}" pattern: "*.{vcf.gz}"
- tbi: - tbi:
type: file type: file
description: tabix index file description: tabix index file