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test(subworkflows): Update gatk_create_som_pon tags

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This commit is contained in:
Edmund Miller 2021-11-15 08:41:13 -06:00
parent 15269e74e9
commit b0240a014a
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2 changed files with 7 additions and 6 deletions
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6
tests/config/pytest_modules.yml
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@ -466,7 +466,7 @@ gatk4/createsequencedictionary:
- modules/gatk4/createsequencedictionary/**
- tests/modules/gatk4/createsequencedictionary/**
gatk4/createsomaticpanelofnormals:
gatk4/createsomaticpanelofnormals: &gatk4/createsomaticpanelofnormals
- modules/gatk4/createsomaticpanelofnormals/**
- tests/modules/gatk4/createsomaticpanelofnormals/**
@ -482,7 +482,7 @@ gatk4/filtermutectcalls:
- modules/gatk4/filtermutectcalls/**
- tests/modules/gatk4/filtermutectcalls/**
gatk4/genomicsdbimport:
gatk4/genomicsdbimport: &gatk4/genomicsdbimport
- modules/gatk4/genomicsdbimport/**
- tests/modules/gatk4/genomicsdbimport/**
@ -1400,3 +1400,5 @@ subworkflows/sra_fastq:
subworkflows/gatk_create_som_pon:
- subworkflows/nf-core/gatk_create_som_pon/**
- tests/subworkflows/nf-core/gatk_create_som_pon/**
- *gatk4/genomicsdbimport
- *gatk4/createsomaticpanelofnormals

7
tests/subworkflows/nf-core/gatk_create_som_pon/test.yml
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@ -2,11 +2,10 @@
command: nextflow run ./tests/subworkflows/nf-core/gatk_create_som_pon -entry test_gatk_create_som_pon -c tests/config/nextflow.config
tags:
- subworkflows/gatk_create_som_pon
- gatk4
# Modules
- gatk4
- gatk4
- gatk4/genomicsdbimport
- gatk4/createsomaticpanelofnormals
# - gatk4/genomicsdbimport
# - gatk4/createsomaticpanelofnormals
files:
# gatk4 mutect2
- path: output/gatk4/test1.vcf.gz