test(subworkflows): Update gatk_create_som_pon tags

samtools
Edmund Miller 3 years ago
parent 15269e74e9
commit b0240a014a
No known key found for this signature in database
GPG Key ID: BD387FF7BC10AA9D

@ -466,7 +466,7 @@ gatk4/createsequencedictionary:
- modules/gatk4/createsequencedictionary/**
- tests/modules/gatk4/createsequencedictionary/**
gatk4/createsomaticpanelofnormals:
gatk4/createsomaticpanelofnormals: &gatk4/createsomaticpanelofnormals
- modules/gatk4/createsomaticpanelofnormals/**
- tests/modules/gatk4/createsomaticpanelofnormals/**
@ -482,7 +482,7 @@ gatk4/filtermutectcalls:
- modules/gatk4/filtermutectcalls/**
- tests/modules/gatk4/filtermutectcalls/**
gatk4/genomicsdbimport:
gatk4/genomicsdbimport: &gatk4/genomicsdbimport
- modules/gatk4/genomicsdbimport/**
- tests/modules/gatk4/genomicsdbimport/**
@ -1400,3 +1400,5 @@ subworkflows/sra_fastq:
subworkflows/gatk_create_som_pon:
- subworkflows/nf-core/gatk_create_som_pon/**
- tests/subworkflows/nf-core/gatk_create_som_pon/**
- *gatk4/genomicsdbimport
- *gatk4/createsomaticpanelofnormals

@ -2,11 +2,10 @@
command: nextflow run ./tests/subworkflows/nf-core/gatk_create_som_pon -entry test_gatk_create_som_pon -c tests/config/nextflow.config
tags:
- subworkflows/gatk_create_som_pon
# Modules
- gatk4
- gatk4
- gatk4/genomicsdbimport
- gatk4/createsomaticpanelofnormals
# Modules
# - gatk4/genomicsdbimport
# - gatk4/createsomaticpanelofnormals
files:
# gatk4 mutect2
- path: output/gatk4/test1.vcf.gz

Loading…
Cancel
Save