This updates the fgbio container version (#1863)

* This updates the fgbio container version * Also updated conda install command
2 years ago · b2a8464e3e
parent b5facb2db2
commit b2a8464e3e
1 changed files with 3 additions and 3 deletions
--- a/modules/fgbio/fastqtobam/main.nf
+++ b/modules/fgbio/fastqtobam/main.nf
@ -2,10 +2,10 @@ process FGBIO_FASTQTOBAM {
    tag "$meta.id"
    label 'process_low'

-    conda (params.enable_conda ? "bioconda::fgbio=1.4.0" : null)
+    conda (params.enable_conda ? "bioconda::fgbio=2.0.2" : null)
    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/fgbio:1.4.0--hdfd78af_0' :
-        'quay.io/biocontainers/fgbio:1.4.0--hdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/fgbio:2.0.2--hdfd78af_0' :
+        'quay.io/biocontainers/fgbio:2.0.2--hdfd78af_0' }"

    input:
    tuple val(meta), path(reads)