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This updates the fgbio container version (#1863)

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* This updates the fgbio container version

* Also updated conda install command
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WackerO 2022-07-11 16:17:54 +02:00 committed by GitHub
parent b5facb2db2
commit b2a8464e3e
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1 changed files with 3 additions and 3 deletions
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modules/fgbio/fastqtobam/main.nf
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@ -2,10 +2,10 @@ process FGBIO_FASTQTOBAM {
tag "$meta.id" tag "$meta.id"
label 'process_low' label 'process_low'
conda (params.enable_conda ? "bioconda::fgbio=1.4.0" : null) conda (params.enable_conda ? "bioconda::fgbio=2.0.2" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/fgbio:1.4.0--hdfd78af_0' : 'https://depot.galaxyproject.org/singularity/fgbio:2.0.2--hdfd78af_0' :
'quay.io/biocontainers/fgbio:1.4.0--hdfd78af_0' }" 'quay.io/biocontainers/fgbio:2.0.2--hdfd78af_0' }"
input: input:
tuple val(meta), path(reads) tuple val(meta), path(reads)