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fix args in nextflow.config
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@ -1,5 +1,5 @@
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process {
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ext.args = "WARN_ON_MISSING_CONTIG=true"
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ext.args = "--WARN_ON_MISSING_CONTIG true"
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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}
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