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Update dsh-bio to 2.0.6. (#1075)

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Michael L Heuer 2021-11-16 05:37:27 -06:00 committed by GitHub
parent bc8899f1bf
commit b50f4e3d59
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5 changed files with 15 additions and 15 deletions
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6
modules/dshbio/exportsegments/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_EXPORTSEGMENTS {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0"
} }
input: input:

6
modules/dshbio/filterbed/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_FILTERBED {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0"
} }
input: input:

6
modules/dshbio/filtergff3/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_FILTERGFF3 {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0"
} }
input: input:

6
modules/dshbio/splitbed/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_SPLITBED {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0"
} }
input: input:

6
modules/dshbio/splitgff3/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_SPLITGFF3 {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0"
} }
input: input: