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test(config): One config to rule them all

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Edmund Miller 2020-11-24 14:20:42 -06:00 committed by Edmund Miller
parent 2e56022e31
commit b96f2d6a5e
2 changed files with 3 additions and 2 deletions
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1
tests/fastqc/nextflow.config → tests/config/nextflow.config
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@ -1,3 +1,4 @@
params { params {
outdir = "output/" outdir = "output/"
publish_dir_mode = "copy" publish_dir_mode = "copy"

4
tests/fastqc/test_fastqc.yml
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@ -1,5 +1,5 @@
- name: Run fastqc single-end test workflow - name: Run fastqc single-end test workflow
command: nextflow run ./tests/fastqc/ -profile docker -entry test_single_end command: nextflow run ./tests/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config
tags: tags:
- fastqc - fastqc
files: files:
@ -8,7 +8,7 @@
- path: output/test_single_end/test_fastqc.zip - path: output/test_single_end/test_fastqc.zip
- name: Run fastqc paired-end test workflow - name: Run fastqc paired-end test workflow
command: nextflow run ./tests/fastqc/ -profile docker -entry test_paired_end command: nextflow run ./tests/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config
tags: tags:
- fastqc - fastqc
files: files: