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fix: update to gatk4.2.0.0 (#576)
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1 changed files with 3 additions and 3 deletions
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@ -11,11 +11,11 @@ process GATK4_SAMTOFASTQ {
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mode: params.publish_dir_mode,
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saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
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conda (params.enable_conda ? 'bioconda::gatk4=4.1.9.0' : null)
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conda (params.enable_conda ? "bioconda::gatk4=4.2.0.0" : null)
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if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
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container 'https://depot.galaxyproject.org/singularity/gatk4:4.1.9.0--py39_0'
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container "https://depot.galaxyproject.org/singularity/gatk4:4.2.0.0--0"
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} else {
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container 'quay.io/biocontainers/gatk4:4.1.9.0--py39_0'
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container "quay.io/biocontainers/gatk4:4.2.0.0--0"
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}
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input:
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