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ci: Seperate out out copying nextflow to bin
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2 changed files with 11 additions and 8 deletions
10
.github/workflows/nf-core-linting.yml
vendored
10
.github/workflows/nf-core-linting.yml
vendored
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@ -56,16 +56,18 @@ jobs:
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- uses: actions/cache@v2
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- uses: actions/cache@v2
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id: cache-nextflow
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id: cache-nextflow
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with:
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with:
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path: /usr/local/bin/nextflow
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path: nextflow
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key: ${{ runner.os }}-nextflow
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key: ${{ runner.os }}-nextflow
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- name: Install Nextflow
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- name: Install Nextflow
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if: steps.cache-nextflow.outputs.cache-hit != 'true'
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if: steps.cache-nextflow.outputs.cache-hit != 'true'
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env:
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env:
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NXF_VER: ${{ matrix.nxf_version }}
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CAPSULE_LOG: none
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CAPSULE_LOG: none
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run: |
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run: wget -qO- get.nextflow.io | bash
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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- name: Copy nextflow to bin
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run: sudo cp nextflow /usr/local/bin/
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- name: Lint ${{ matrix.tags }}
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- name: Lint ${{ matrix.tags }}
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run: nf-core modules lint . -t ${{ matrix.tags }}
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run: nf-core modules lint . -t ${{ matrix.tags }}
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9
.github/workflows/pytest-workflow.yml
vendored
9
.github/workflows/pytest-workflow.yml
vendored
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@ -51,7 +51,7 @@ jobs:
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- uses: actions/cache@v2
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- uses: actions/cache@v2
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id: cache-nextflow
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id: cache-nextflow
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with:
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with:
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path: /usr/local/bin/nextflow
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path: nextflow
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key: ${{ runner.os }}-nextflow
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key: ${{ runner.os }}-nextflow
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- name: Install Nextflow
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- name: Install Nextflow
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@ -59,9 +59,10 @@ jobs:
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env:
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env:
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NXF_VER: ${{ matrix.nxf_version }}
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NXF_VER: ${{ matrix.nxf_version }}
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CAPSULE_LOG: none
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CAPSULE_LOG: none
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run: |
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run: wget -qO- get.nextflow.io | bash
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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- name: Copy nextflow to bin
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run: sudo cp nextflow /usr/local/bin/
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- name: Set up Singularity
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- name: Set up Singularity
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if: matrix.profile == 'singularity'
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if: matrix.profile == 'singularity'
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