fix test.yml

This commit is contained in:
Nicolas Vannieuwkerke 2022-06-09 15:14:37 +02:00
parent 81fff7384d
commit c50df9ad04

View file

@ -4,8 +4,8 @@
- gatk4/reblockgvcf
- gatk4
files:
- path: output/gatk4/test.reblock.g.vcf.gz
- path: output/gatk4/test.reblock.g.vcf.gz.tbi
- path: output/gatk4/test.rb.g.vcf.gz
- path: output/gatk4/test.rb.g.vcf.gz.tbi
- name: gatk4 reblockgvcf test_gatk4_reblockgvcf_intervals
command: nextflow run ./tests/modules/gatk4/reblockgvcf -entry test_gatk4_reblockgvcf_intervals -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/reblockgvcf/nextflow.config
@ -13,8 +13,8 @@
- gatk4/reblockgvcf
- gatk4
files:
- path: output/gatk4/test.reblock.g.vcf.gz
- path: output/gatk4/test.reblock.g.vcf.gz.tbi
- path: output/gatk4/test.rb.g.vcf.gz
- path: output/gatk4/test.rb.g.vcf.gz.tbi
- name: gatk4 reblockgvcf test_gatk4_reblockgvcf_dbsnp
command: nextflow run ./tests/modules/gatk4/reblockgvcf -entry test_gatk4_reblockgvcf_dbsnp -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/reblockgvcf/nextflow.config
@ -22,5 +22,5 @@
- gatk4/reblockgvcf
- gatk4
files:
- path: output/gatk4/test.reblock.g.vcf.gz
- path: output/gatk4/test.reblock.g.vcf.gz.tbi
- path: output/gatk4/test.rb.g.vcf.gz
- path: output/gatk4/test.rb.g.vcf.gz.tbi