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fix test.yml

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This commit is contained in:
Nicolas Vannieuwkerke 2022-06-09 15:14:37 +02:00
parent 81fff7384d
commit c50df9ad04
1 changed files with 6 additions and 6 deletions
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12
tests/modules/gatk4/reblockgvcf/test.yml
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@ -4,8 +4,8 @@
- gatk4/reblockgvcf - gatk4/reblockgvcf
- gatk4 - gatk4
files: files:
- path: output/gatk4/test.reblock.g.vcf.gz - path: output/gatk4/test.rb.g.vcf.gz
- path: output/gatk4/test.reblock.g.vcf.gz.tbi - path: output/gatk4/test.rb.g.vcf.gz.tbi
- name: gatk4 reblockgvcf test_gatk4_reblockgvcf_intervals - name: gatk4 reblockgvcf test_gatk4_reblockgvcf_intervals
command: nextflow run ./tests/modules/gatk4/reblockgvcf -entry test_gatk4_reblockgvcf_intervals -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/reblockgvcf/nextflow.config command: nextflow run ./tests/modules/gatk4/reblockgvcf -entry test_gatk4_reblockgvcf_intervals -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/reblockgvcf/nextflow.config
@ -13,8 +13,8 @@
- gatk4/reblockgvcf - gatk4/reblockgvcf
- gatk4 - gatk4
files: files:
- path: output/gatk4/test.reblock.g.vcf.gz - path: output/gatk4/test.rb.g.vcf.gz
- path: output/gatk4/test.reblock.g.vcf.gz.tbi - path: output/gatk4/test.rb.g.vcf.gz.tbi
- name: gatk4 reblockgvcf test_gatk4_reblockgvcf_dbsnp - name: gatk4 reblockgvcf test_gatk4_reblockgvcf_dbsnp
command: nextflow run ./tests/modules/gatk4/reblockgvcf -entry test_gatk4_reblockgvcf_dbsnp -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/reblockgvcf/nextflow.config command: nextflow run ./tests/modules/gatk4/reblockgvcf -entry test_gatk4_reblockgvcf_dbsnp -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/reblockgvcf/nextflow.config
@ -22,5 +22,5 @@
- gatk4/reblockgvcf - gatk4/reblockgvcf
- gatk4 - gatk4
files: files:
- path: output/gatk4/test.reblock.g.vcf.gz - path: output/gatk4/test.rb.g.vcf.gz
- path: output/gatk4/test.reblock.g.vcf.gz.tbi - path: output/gatk4/test.rb.g.vcf.gz.tbi