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fix config
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parent
743e95c61b
commit
c5627e0274
2 changed files with 6 additions and 6 deletions
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@ -2,12 +2,12 @@ process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: BIOBAMBAM_BAMMERGE {
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ext.args = [
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ext.args = {[
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"md5=1",
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{"md5filename=${meta.id}.md5"},
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"md5filename=${meta.id}.md5",
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"index=1",
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{"indexfilename=${meta.id}.bam.bai"}
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].join(" ").trim()
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"indexfilename=${meta.id}.bam.bai"
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].join(" ").trim()}
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}
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}
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@ -1,8 +1,8 @@
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- name: biobambam bammerge test_biobambam_bammerge_paired
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command: nextflow run ./tests/modules/biobambam/bammerge -entry test_biobambam_bammerge_paired -c ./tests/config/nextflow.config -c ./tests/modules/biobambam/bammerge/nextflow.config
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tags:
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- biobambam
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- biobambam/bammerge
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- biobambam
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files:
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- path: output/biobambam/test.bam
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md5sum: bc3d32ab6a54d1894ca7cc79387dec57
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@ -14,8 +14,8 @@
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- name: biobambam bammerge test_biobambam_bammerge_single
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command: nextflow run ./tests/modules/biobambam/bammerge -entry test_biobambam_bammerge_single -c ./tests/config/nextflow.config -c ./tests/modules/biobambam/bammerge/nextflow.config
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tags:
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- biobambam
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- biobambam/bammerge
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- biobambam
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files:
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- path: output/biobambam/test.bam
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md5sum: 86185d3d6895a7722d3b3a09c6f91bfc
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