🧸 Updated rasusa (#437)

* changed genome size input position

* fixed...😊

software/rasusa/main.nf

@@ -19,9 +19,8 @@ process RASUSA {
     }
 
     input:
-    tuple val(meta), path(reads)
+    tuple val(meta), path(reads), val(genome_size)
     val   depth_cutoff
-    val   genome_size
 
     output:
     tuple val(meta), path('*.fastq.gz'), emit: reads

software/rasusa/meta.yml

@@ -22,12 +22,12 @@ input:
   - reads:
         type: file
         description: List of input paired-end FastQ files
-  - depth_cutoff:
-        type: integer
-        description: Depth of coverage cutoff
   - genome_size:
         type: string
         description: Genome size of the species
+  - depth_cutoff:
+        type: integer
+        description: Depth of coverage cutoff
 
 output:
   - meta:

tests/software/rasusa/main.nf

@@ -8,11 +8,11 @@ workflow test_rasusa {
     input = [ [ id:'test', single_end:false], // meta map
               [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
                 file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)
-              ]
+              ],
+              "1000000b"
             ]
 
     depth_cutoff = 100
-    genome_size = "1000000b"
 
-    RASUSA ( input, depth_cutoff, genome_size )
+    RASUSA ( input, depth_cutoff )
 }