millironx/nf-core_modules
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Fix barfing linters

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drpatelh 2021-02-08 00:57:06 +00:00
parent c92fe8701a
commit c9cfdd31f3
3 changed files with 3 additions and 4 deletions
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2
.github/filters.yml vendored
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@ -171,4 +171,4 @@ trimgalore:
ucsc_bedgraphtobigwig:
- software/ucsc/bedgraphtobigwig/**
- tests/software/ucsc/bedgraphtobigwig/**
- tests/software/ucsc/bedgraphtobigwig/**

3
README.md
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@ -12,7 +12,6 @@
[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)
> THIS REPOSITORY IS UNDER ACTIVE DEVELOPMENT. SYNTAX, ORGANISATION AND LAYOUT MAY CHANGE WITHOUT NOTICE!
> PLEASE BE KIND TO OUR CODE REVIEWERS AND SUBMIT ONE PULL REQUEST PER MODULE :)
A repository for hosting [Nextflow DSL2](https://www.nextflow.io/docs/latest/dsl2.html) module files containing tool-specific process definitions and their associated documentation.
@ -255,7 +254,7 @@ In order to test that each module added to `nf-core/modules` is actually working
#### Pytest workflow
- Every module MUST have a test workflow utilising test data added to the appropriate directory e.g. [`tests/software/fastqc/main.nf`](tests/software/fastqc/main.nf)
- Every module MUST have a test workflow utilising test data added to the appropriate directory e.g. [`tests/software/fastqc/main.nf`](tests/software/fastqc/main.nf)
- Any outputs produced by the test workflow MUST be included in the [pytest-workflow](https://pytest-workflow.readthedocs.io/en/stable) for that tool e.g. [`tests/software/fastqc/test.yml`](tests/software/fastqc/test.yml). `md5sum` checks are the preferable choice of test to determine file changes, however, this may not be possible for all outputs generated by some tools e.g. if they include time stamps or command-related headers. Please do your best to avoid just checking for the file being present e.g. it may still be possible to check that the file contains the appropriate text snippets.

2
software/TOOL/SUBTOOL/meta.yml
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@ -69,4 +69,4 @@ output:
pattern: "*.{version.txt}"
## TODO nf-core: Add your GitHub username below
authors:
- "@your_github_username"
- "@your_github_username"